I did some testing today. And i noticed one small odd thing, and another very annoying issue.
The small odd thing is that it doesn't seem to matter what setting i put the Multiple videos setting on. It will run even thought i use multiple videos, or first video only. Which i guess makes sense because its only 1 video file.
The annoying issue is that as for right now this is not watchable, because for some reason when SVP is running it screws up the 3d effects on moving elements on the screen, and i don't really know why. (this is only with svp running on blu ray iso.. side-by-side 2d videos work fine with SVP)
These are the settings i use - http://i.imgur.com/6WGgsCu.png
These settings are very good for me, and cause almost no artifacting, and are those i use for side-by-side encoded 2d video files. (I have have removed Decrease grid step and increased the Motion vector grid from 16 to 24 to lower resource use since its two instances of ffdshow.) I also tried to use several automatic settings, but that didn't change anything with the 3d effect issue.
The lower frames per second i use, the less it screws up the 3d. I would guess that it does this because SVP treats the two video channels as two different video sources since i can't set it to 3d sbs in the svp settings, and so the calculations are going to be different, and that makes the video less accurate which is important for 3d.
When there is little or no movement on the screen the 3d works fine.
I don't know how number of computation threads works on performance or accuracy (if any) so please explain or link to someplace that explains
My svp scores are ~300 for my bad pc and 550~ for my good pc. And when the movies are just running side by side each before i set my projector to 3d, there does not seem to be much artifacting.